| Scholarship: |
Publications:
- Fok WC, Bokov A, Gelfond J, Yu Z, Zhang Y, Doderer
M, Chen Y, Javors M, Wood WH 3rd, Zhang Y, Becker KG, Richardson A, Perez VI,
2013, Combined treatment of rapamycin and dietary restriction has a larger
effect on the transcriptome and metabolome of liver. Aging Cell doi:
10.111/acel. 12175.
- Gu F*, Doderer MS*, Huang Y-W,
Roa JC, Goodfellow PJ, Kizer EL, Huang THM, Chen Y, 2013, CMS: A Web-Based
System for Visualization and Analysis of Genome-Wide Methylation Data of
Human Cancers. PLoS ONE 8(4): e60980. (*co-first authors)
- Doderer MS, Anguiano Z, Suresh U, Dashnamoorthy
R, Bishop AJR, and Chen Y, 2012,
Pathway Distiller – multisource biological pathway consolidation, BMC
Genomics, 13(Supp6:S18).
- Doderer MS, Anguiano Z, Suresh U, Dashnamoorthy
R, Bishop AJR, and Chen Y, 2011,
Multisource Biological Pathway Consolidation, IEEE International Workshop on
Genomic Signal Processing and Statistics
publications in the conference proceedings (GENSIPS'11).
- Doderer MS, Burkhardt K, Robbins KA, 2011,
SIDECACHE: Information access, management and dissemination framework for web
services, BMC Research Notes, 4(182).
- Doderer MS, Yoon K, Robbins KA, 2010, SIDEKICK:
Genomic data driven analysis and decision-making framework, BMC
Bioinformatics, 11(611).
- Wiles AM*, Doderer MS*, Ruan J*,
Gu TT, Ravi D, Blackman B, Bishop AJ R, 2010, Building and analyzing protein
interactome networks by cross-species comparisons, BMC Systems Biology,
4(36).
- Yoon K, Ko D, Doderer MS, Livi CB and Penalva LO,
2008, Over-represented sequences located on 3' UTRs are potentially involved
in regulatory functions, RNAbiology, 5(4).
- Karmaker A, Yoon K, Doderer MS, Kruzelock R, Kwek S,
2007, Identifying Transcription Regulatory Elements in the Human and Mouse
Genomes Using Tissue-Specific Gene Expression Profiles, Journal of
Integrative Bioinformatics, 4(2).
- Doderer MS, Yoon K, and Kwek S, 2007, Species Independent
Protein Localization Prediction for Multicompartmentalized Proteins, The 2007
International Conference on Machine Learning: Models, Technologies &
Applications and for publications in the conference proceedings (MLMTA'07).
- Karmaker A, Doderer MS, Harris SE, Kwek S, 2007,
Discovery of Transcription Factors Using Protein Subcellular Localization
Prediction and Gene Expression Profile Analysis, The 2007 International
Conference on Machine Learning: Models, Technologies & Applications and
for publications in the conference proceedings (MLMTA'07).
- Doderer MS, Yoon K, Salinas J and Kwek S, 2006,
Protein Subcellular Localization Prediction using a Hybrid of Similarity
search and Error-Correcting Output Code Techniques That Produces
Interpretable Results, In Silico Biology 6(5).
Abstracts:
- Yoon K, Doderer MS, Chen Y, 2011, A Combinatorial
High-throughput Transcriptome Sequencing (RNA-Seq) Data Analysis Strategy,
27th SBEC Southern Biomedical Engineering Conference. Apr. 29 - May 1, 2011,
Arlington, Texas
-
Doderer MS, Salinas J, 2010, Use of Machine Learning
Techniques to Predict Life-saving Interventions in the Prehospital
Environment and Emergency Department, 23rd Annual Scientific Assembly of the
Eastern Association for the Surgery of Trauma (EAST). Jan. 19-23, 2010,
Phoenix, Arizona
- Yoon K, Dashnamoorthy R, Doderer MS, Wiles A, Ko D,
Kwek S, Alex J.R. Bishop, 2007, Determining off-target effects within
Drosophila genome-wide screens, Keystone Symposia, Systems Biology and
Regulatory Networks (X5), Mar 22 - Mar 27, 2007, Steamboat Springs, Colorado
- Karmaker A, Salinas E, Yoon K, Doderer MS, Harris SE,
Kwek S, 2007, The Construction of a Human Transcription Subnet Using
Tissue-Specific Gene Expression Profile and Cross Genome Comparison, with
E2F5 and RELB as case studies, Keystone Symposia, Systems Biology and
Regulatory Networks (X5), Mar 22 - Mar 27, 2007, Steamboat Springs, Colorado
- Doderer MS, Kwek S, Salinas J and Yoon K, 2005,
Layered Classification using Homologous Similarity and Error-Correcting
Output Coding for Predicting Protein Subcellular Localization, 3rd Annual
Rocky Mountain Regional Bioinformatics Conference (Rocky'05).
- Doderer MS, Salinas J, Yoon K and Kwek S, 2005.
Using error-correcting output coding for predicting multi-class subcellular
localization, International conference on Intelligent Systems for Molecular
Biology (ISMB).
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